Add parameter to table output nonmem
PRED VS WRES: Predicted variable in the X-axis and weighted residuals in the Y-axis. PRED VS RES: Predicted variable in the X-axis and residual variable in the Y-axis. PRED VS CWRES: Predicted variable in the X-axis and conditional weighted residuals in the Y-axis.
(See the “Options tab” description for plots for more details.) Plot edits are maintained during consecutive NONMEM modeling runs.ĭV VS PRED: Dependent variable in the X-axis and predicted variable in the Y-axis. Users can double-click any plot in the Results tab to edit it. (Optional) File name of the TABLE statement: NONMEM generated table files. Omega SE: Standard errors of the random effect covariance matrix element estimates (omegas), if the $COV statement is in the control file. Theta SE: Standard errors of the fixed effect estimates (thetas) if the $COV statement is in the control file. Sigma: Estimates of the observation error variance(s).ĬOVARIANCE MATRIX OF ESTIMATE: Covariance matrix for the model parameter estimates if the $COV statement is in the control file.ĬORRELATION MATRIX OF ESTIMATE: Correlation matrix for the model parameter estimates if the $COV statement is in the control file. Omega: Estimates of the elements of the random effect(s) covariance matrix. Sigma SE: Standard error(s) of the observation error variance estimates if the $COV statement is in the control file. Note: To correctly read in TABLE files generated by NONMEM, the ONEHEADER command must be present in the control file as part of the TABLE statements.
If the number of parameters is available then AIC and BIC are calculated:ĪIC=Min. If the control file contains several $EST statements the number of parameters comment preceding the estimate statement(s) would be used. If there is no $COV statement, then users can specify the number of parameters in the control file by adding this comment prior to the $EST statement: If a NONMEM control file has a $COV statement then the total number of parameters in the model are calculated in the Summary table. Stdout: Warnings and errors (if any) for problems. Settings: Input worksheet used and the options selected. PRDERR: List of errors encountered during execution of the PRED subroutine. GFCOMPILE: List of Digital FORTRAN compiler messages created during NONMEM execution.įREPORT: List of subroutines that generate commands used to create the NONMEM model.įSUBS: List of generated FORTRAN subroutines.
Summary: Contains the total number of observations, total number of subjects, lengths of theta, minimum objective function value, total number of parameters, AIC, BIC, and the conditions for estimation. (Do not use the name PHXTBL (lowercase, uppercase, or mixed case) for any other table, since the name is in use.) The table is generated by default even if there is no TABLE statement in the control file. PHXTBL: Summary of ID, TIME, CWRES, DV, PRED, RES, and WRES. The NONMEM object generates the following output:
Images: Graphs or other images in recognized image formats (jpg, tiff, emf, etc.) Other: Other kinds of files, for example: documents, export files, binary files, etc. Text Output: Settings files, log files, and other text output The output falls into the following categories: The results are displayed on the Results tab. It is now safe to close the project or to continue working in Phoenix. The project must have been saved at least once prior to executing on RPS, otherwise execution will not pass validation and a validation message will be generated.Īt this point, the step being executed on RPS, along with any dependent objects, has been locked. See “Phoenix Configuration” for instructions. Click ( Execute icon) or click Execute Remotely in the Options tab to run the job remotely.Įxecuting a third party tool object remotely sends the job to the server that is defined in the Preferences dialog ( Edit > Preferences > Remote Execution).